Amazon Seller Fees (2025): What They Are—and How to Book Them in Beancount

Selling on Amazon is a powerful way to reach millions of customers, but the platform's fee structure can feel like a maze. If you're an operator who values clean, auditable, double-entry books, tracking these costs accurately is non-negotiable. This guide breaks down Amazon's 2025 US marketplace fees and shows you exactly how to record them using the plain-text accounting tool, Beancount.

TL;DR ⚡

• You’ll encounter a handful of recurring Amazon charges: Selling plan, Referral, Closing (media), FBA fulfillment & storage, Inbound placement, Low‑inventory‑level, Returns processing, Refund administration, and a High‑volume listing fee for very large catalogs.
• Keep a separate Assets:Amazon:Clearing account. Book sales and fees there; when Amazon pays out, transfer the net to your bank. This makes reconciliation a breeze.
• Track each SKU as its own commodity (e.g., SKU:WATER-BOTTLE) so Beancount can compute your Cost of Goods Sold (COGS) by lot automatically.
• You can reconcile quickly by importing settlement or date-range reports and mapping Amazon’s “transaction types” directly to your Beancount expense accounts.

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The Amazon Fee Map (US Marketplace)

Here’s a breakdown of the most common fees you'll see in 2025.

Selling Plan Fee

This is your basic subscription fee for accessing the marketplace.

• Individual Plan: No monthly fee. Instead, you pay $0.99 for each item you sell.
• Professional Plan: A flat $39.99 per month, which waives the per-item charge. This is the standard choice for any serious seller. All other selling fees apply on top of this.

Referral Fee

This is Amazon's commission for each sale.

It's a percentage of the item’s total sales price (including shipping and any gift wrapping). The rate depends entirely on the product category. Most categories fall in the 8–15% band, but some use tiered rates (e.g., 15% on the first $500 and 8% on the portion above that). Certain categories also have a minimum referral fee, often $0.30. Always check the current rate card for your specific category.

Closing Fee (Media Categories)

If you sell media items like Books, Music, Video, or DVDs, Amazon charges an additional flat $1.80 per-item closing fee.

FBA Fulfillment Fees

These are the per-unit pick, pack, and ship fees for using Fulfillment by Amazon (FBA). The cost varies based on the item's size and weight. Amazon updates these rate cards periodically. For 2025, non-peak rates reverted to 2024 non-peak levels on January 15, 2025. Always consult the current FBA rate card to find your product's exact size tier and associated fee.

Monthly Storage & Aged-Inventory Surcharge (FBA)

Amazon charges for the space your inventory occupies in their fulfillment centers.

• Monthly Storage: Billed by the cubic foot.
• Aged-Inventory Surcharge: An additional monthly fee assessed on inventory that has been sitting in a fulfillment center for too long. This stacks on top of the regular monthly storage fee.

Inbound Placement Service Fee (FBA)

This is a per-unit fee tied to how you send inventory to Amazon. It's designed to cover the costs of Amazon distributing your products across its fulfillment network. Certain programs, like "New Selection," may temporarily exempt new products up to set limits.

Low-Inventory-Level Fee (FBA)

This fee applies to standard-size products with consistently low inventory levels relative to customer demand. Amazon measures this with a metric called "historical days of supply." If your stock level for a popular item drops below the threshold (generally 28 days), this fee kicks in.

Returns Processing Fee (FBA)

For products in categories with higher-than-typical return rates (like apparel and shoes), Amazon can charge a returns processing fee on each customer return. Some "New Selection" units are waived from this fee up to a certain cap.

Refund Administration Fee

When you issue a customer a refund for an order, Amazon gives you back the referral fee you paid. However, they keep a portion of it as a processing fee. This is the lesser of $5.00 or 20% of the referral fee for that item.

High-Volume Listing Fee (Huge Catalogs)

This fee only affects sellers with massive catalogs. If you have more than 1.5 million active SKUs, Amazon charges a monthly fee of $0.001 per eligible SKU above that threshold.

Note: Rates and policies can differ by country, region, and category. Always review your local Seller Central help pages before booking.

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How These Fees Show Up in Your Reports 🧾

You can find all this data in Seller Central. The two most useful reports for accounting are:

1. Date Range Reports (Payments → Date Range Reports): These provide a summary of your income, expenses, taxes, and net transfers for a specific period. They are perfect for high-level ledger import and reconciliation.
2. Settlement Files (e.g., Flat File V2): These files break down every single transaction, showing the fee type, order ID, amount, and date. This is the granular data you'll use to map everything correctly.

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A Beancount-First Way to Record Amazon Activity

Here’s how to translate Amazon's complex world into clean, simple Beancount entries.

1. Set Up a Minimal Chart of Accounts

First, define the accounts you'll need. This simple structure covers everything.

; --- ASSETS ---
Assets:Amazon:Clearing        ; Your Amazon "wallet"
Assets:Bank:Checking          ; Where payouts land
Assets:Inventory:SKU:<code>    ; One sub-account per SKU

; --- INCOME & COGS ---
Income:Sales:Amazon
Expenses:COGS:Inventory

; --- EXPENSES ---
Expenses:Marketplace:Amazon:Referral
Expenses:Marketplace:Amazon:FBAFulfillment
Expenses:Marketplace:Amazon:Storage:Monthly
Expenses:Marketplace:Amazon:Storage:Aged
Expenses:Marketplace:Amazon:InboundPlacement
Expenses:Marketplace:Amazon:LowInventoryLevel
Expenses:Marketplace:Amazon:ReturnsProcessing
Expenses:Marketplace:Amazon:Other ; For misc. fees

Beancount’s ability to track inventory lots and cost basis is a superpower. You'll "buy" inventory into Assets:Inventory:SKU:... with a cost {...}. When you sell, Beancount automatically calculates the Cost of Goods Sold.

2. Book Each Sale and Its Fees

Let's record a $30 FBA sale for SKU:WATER-BOTTLE. The referral fee is $4.50, FBA fulfillment is $4.24, and you incurred a $0.15 low-inventory fee. You originally purchased this unit for $5.00.

2025-02-10 * "Amazon Order 113-2233445-6677889" "WATER-BOTTLE"
  Assets:Amazon:Clearing                         21.11 USD
  Income:Sales:Amazon                           -30.00 USD
  Expenses:Marketplace:Amazon:Referral            4.50 USD
  Expenses:Marketplace:Amazon:FBAFulfillment      4.24 USD
  Expenses:Marketplace:Amazon:LowInventoryLevel   0.15 USD
  Assets:Inventory:SKU:WATER-BOTTLE              -1 SKU:WATER-BOTTLE {5.00 USD}
  Expenses:COGS:Inventory                         5.00 USD

Why it balances: The $30 sale is credited to Income. The fees ($4.50 + $4.24 + $0.15) and the COGS ($5.00) are debited to your expense accounts. The net cash from the sale, $21.11, is debited to your Assets:Amazon:Clearing account. The inventory asset is credited (reduced by one unit), and the corresponding cost is expensed.

3. Record the Payout

When Amazon disburses your funds, the transaction is simple. You're just moving money from your Amazon "wallet" to your actual bank account.

2025-02-15 * "Amazon Payments" "Settlement disbursement"
  Assets:Bank:Checking                    2,500.00 USD
  Assets:Amazon:Clearing                -2,500.00 USD

After each payout, your Assets:Amazon:Clearing account balance should trend back toward zero. Use your date-range report totals to spot any discrepancies.

4. Handle Storage, Aged Inventory, and Inbound Placement

These fees often appear as separate lines in your settlement reports. Book them as direct debits to your clearing account.

2025-03-15 * "Amazon FBA Storage Fees" "Monthly + aged inventory"
  Expenses:Marketplace:Amazon:Storage:Monthly    125.40 USD
  Expenses:Marketplace:Amazon:Storage:Aged        35.20 USD
  Assets:Amazon:Clearing                        -160.60 USD

2025-03-20 * "FBA Inbound Placement Service" "Shipment split optimization"
  Expenses:Marketplace:Amazon:InboundPlacement    62.00 USD
  Assets:Amazon:Clearing                         -62.00 USD

5. Refunds & Returns

When a customer returns a product, you reverse the sale and the COGS, and account for any non-refundable fees. For this $30 sale, let's say Amazon keeps a $0.30 refund administration fee.

2025-03-02 * "Refund 113-2233445-6677889" "Refunded WATER-BOTTLE"
  Assets:Amazon:Clearing                       -29.70 USD  ; Net debit
  Income:Sales:Amazon                           30.00 USD  ; Reverse the sale
  Expenses:Marketplace:Amazon:Other              0.30 USD  ; The refund admin fee
  Assets:Inventory:SKU:WATER-BOTTLE              1 SKU:WATER-BOTTLE {5.00 USD}
  Expenses:COGS:Inventory                       -5.00 USD  ; Reverse the COGS

Here, you debit Income to reverse the revenue, and credit Expenses:COGS to reverse the cost. The inventory unit is added back to your asset account. The net effect on your Assets:Amazon:Clearing is the amount refunded to the customer.

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Importing & Reconciling Quickly

The key to efficiency is mapping. Export a Date Range Report or a Flat File V2 settlement report from Seller Central. Then, create a simple mapping from Amazon's transaction-type column to your expense accounts:

• Order → Income:Sales:Amazon
• Commission → Expenses:Marketplace:Amazon:Referral
• FBA-fulfillment-fee → Expenses:Marketplace:Amazon:FBAFulfillment
• StorageFee → Expenses:Marketplace:Amazon:Storage:Monthly
• AgedInventorySurcharge → Expenses:Marketplace:Amazon:Storage:Aged
• InboundPlacementFee → Expenses:Marketplace:Amazon:InboundPlacement
• LowInventoryLevelFee → Expenses:Marketplace:Amazon:LowInventoryLevel

For those looking to automate, Beancount’s import ecosystem (like beancount-import) is fantastic. You define the rules once, and your settlement files can be ingested into your ledger automatically.

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Practical Guardrails That Save Money (and Keystrokes) 💰

• Avoid the Low-Inventory Fee: Watch your historical days of supply. Keep enough buffer stock to meet demand, but don't overdo it and trigger aged-inventory surcharges.
• Use New Selection Benefits: When launching new products, enroll them in the New Selection program to get temporary waivers on returns processing and inbound placement fees.
• Check Referral Rates Before Pricing: A small price change could push you over a fee threshold, significantly impacting your net margin. Confirm your category's referral rates and minimums.
• Reconcile Monthly: Pull a Date Range Report every month. This simple habit helps you catch any fee changes from Amazon early and ensures your ledger remains trustworthy.

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Ready-to-Use Beancount Template

To help you get started, I've prepared a starter ledger file. It includes:

• A sensible Amazon chart of accounts.
• Inventory configured as commodities for automatic, lot-based COGS.
• Example entries for sales, fees, storage, refunds, and payouts.

➡️ Download the Template (Open the file in your editor, replace the sample SKU and amounts, and start importing settlement lines.)

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References & Further Reading

• Selling Plans & Fees Overview: Sell on Amazon
• Professional Plan Monthly Fee: Seller Central
• Referral Fee Rates: Seller Central
• 2025 FBA Fulfillment Fees: Seller Central
• Aged-Inventory Surcharge: Seller Central
• Inbound Placement Service Fee: Seller Central
• Low-Inventory-Level Fee: Seller Central
• Returns Processing Fee: Seller Central
• Refund Administration Fee: Seller Central
• High-Volume Listing Fee: Seller Central
• Date Range Reports: Seller Central
• Beancount Inventories & Costing: Beancount Docs

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One Last Tip

If you sell internationally, create marketplace-specific sub-accounts (e.g., Expenses:Marketplace:Amazon:Referral:US, ...:Referral:CA). Set your main operating_currency in Beancount to your home currency. Once your data is structured, Beancount's query language makes it trivial to analyze your fee mix by marketplace, category, or SKU.

Happy booking!